atomica¶

Atomica root module

The Atomica module is the entry point for running simulations and performing analysis using Atomica.

`calibration`	Implements automatic calibration
`cascade`	Utility functions for working with cascades
`data`	Implementation of Databook functionality
`demos`	Defines some defaults for Atomica projects
`excel`	Miscellaneous utility functions for Excel files
`framework`	Implements Framework functionality
`function_parser`	Implements the parameter function parser
`migration`	Manage Project versions and migration
`model`	Implements the Atomica computational graph
`optimization`	Implements various Optimizations in Atomica
`parameters`	Implements data-based model parameters (`ParameterSet`)
`plotting`	Functions for generating plots from model outputs
`programs`	Classes for implementing Programs
`project`	Implements the `Project` user interface for Atomica
`reconciliation`	Implements the automatic reconciliation algorithm
`results`	Implements interface for working with model outputs
`scenarios`	Define classes for handling scenarios
`system`	Define internal system constants and functions
`utils`	Define utility classes used throughout Atomica
`version`	Atomica version file.
`yaml_calibration`	This file implements YAML calibration, a mechanism of programming multiple automated calibration steps (and related operations).