Optimization
CalibrationNode
TimeSeries
ProjectFramework
PlotData
ParameterScenario
ParameterSet
API Reference
calibrate()
cascade_summary()
get_cascade_data()
get_cascade_vals()
plot_cascade()
plot_multi_cascade()
plot_single_cascade()
plot_single_cascade_series()
sanitize_cascade()
sanitize_pops()
validate_cascade()
CascadeEnsemble
CascadeEnsemble.add()
CascadeEnsemble.baseline
CascadeEnsemble.boxplot()
CascadeEnsemble.get_vals()
CascadeEnsemble.mapping_function
CascadeEnsemble.n_samples
CascadeEnsemble.outputs
CascadeEnsemble.plot_bars()
CascadeEnsemble.plot_distribution()
CascadeEnsemble.plot_multi_cascade()
CascadeEnsemble.plot_series()
CascadeEnsemble.pops
CascadeEnsemble.results
CascadeEnsemble.run_sims()
CascadeEnsemble.samples
CascadeEnsemble.set_baseline()
CascadeEnsemble.tvec
CascadeEnsemble.update()
InvalidCascade
ProjectData
ProjectData.add_interaction()
ProjectData.add_pop()
ProjectData.add_transfer()
ProjectData.change_tvec()
ProjectData.end_year
ProjectData.from_spreadsheet()
ProjectData.get_tdve_page()
ProjectData.get_ts()
ProjectData.gitinfo
ProjectData.interpops
ProjectData.new()
ProjectData.pops
ProjectData.remove_interaction()
ProjectData.remove_transfer()
ProjectData.rename_pop()
ProjectData.rename_transfer()
ProjectData.save()
ProjectData.start_year
ProjectData.tables()
ProjectData.tdve
ProjectData.tdve_pages
ProjectData.to_spreadsheet()
ProjectData.to_workbook()
ProjectData.transfers
ProjectData.tvec
ProjectData.validate()
ProjectData.version
InvalidDatabook
demo()
make_demo_scenarios()
apply_widths()
cell_get_number()
cell_get_string()
copy_sheet()
read_dataframes()
read_tables()
standard_formats()
transfer_comments()
update_widths()
validate_category()
TimeDependentConnections
TimeDependentConnections.assumption_heading
TimeDependentConnections.attributes
TimeDependentConnections.from_tables()
TimeDependentConnections.ts_attributes
TimeDependentConnections.write()
TimeDependentConnections.write_assumption
TimeDependentConnections.write_uncertainty
TimeDependentConnections.write_units
TimeDependentValuesEntry
TimeDependentValuesEntry.assumption_heading
TimeDependentValuesEntry.comment
TimeDependentValuesEntry.default_all
TimeDependentValuesEntry.from_rows()
TimeDependentValuesEntry.has_data
TimeDependentValuesEntry.name
TimeDependentValuesEntry.ts_attributes
TimeDependentValuesEntry.tvec
TimeDependentValuesEntry.write()
TimeDependentValuesEntry.write_assumption
TimeDependentValuesEntry.write_uncertainty
TimeDependentValuesEntry.write_units
generate_framework_doc()
ProjectFramework.cascades
ProjectFramework.characs
ProjectFramework.comps
ProjectFramework.created
ProjectFramework.get_charac()
ProjectFramework.get_charac_includes()
ProjectFramework.get_comp()
ProjectFramework.get_databook_units()
ProjectFramework.get_interaction()
ProjectFramework.get_label()
ProjectFramework.get_par()
ProjectFramework.get_variable()
ProjectFramework.gitinfo
ProjectFramework.interactions
ProjectFramework.modified
ProjectFramework.name
ProjectFramework.pars
ProjectFramework.pop_types
ProjectFramework.save()
ProjectFramework.sheets
ProjectFramework.spreadsheet
ProjectFramework.to_spreadsheet()
ProjectFramework.uid
ProjectFramework.version
InvalidFramework
parse_function()
sdiv()
vector_max()
vector_min()
all_frameworks()
all_progsets()
all_results()
migrate()
migration()
register_migration()
Migration
run_model()
Characteristic
Characteristic.id
Characteristic.name
Characteristic.plot()
Characteristic.pop
Characteristic.preallocate()
Characteristic.set_dynamic()
Characteristic.units
Characteristic.update()
Compartment
Compartment.connect()
Compartment.id
Compartment.name
Compartment.outflow
Compartment.plot()
Compartment.pop
Compartment.preallocate()
Compartment.resolve_outflows()
Compartment.set_dynamic()
Compartment.units
Compartment.update()
JunctionCompartment
JunctionCompartment.balance()
JunctionCompartment.connect()
JunctionCompartment.duration_group
JunctionCompartment.id
JunctionCompartment.initial_flush()
JunctionCompartment.name
JunctionCompartment.outflow
JunctionCompartment.plot()
JunctionCompartment.pop
JunctionCompartment.preallocate()
JunctionCompartment.resolve_outflows()
JunctionCompartment.set_dynamic()
JunctionCompartment.units
JunctionCompartment.update()
Link
Link.create()
Link.id
Link.name
Link.plot()
Link.pop
Link.preallocate()
Link.set_dynamic()
Link.units
Link.update()
Model
Model.build()
Model.dt
Model.flush_junctions()
Model.get_pop()
Model.process()
Model.relink()
Model.t
Model.unlink()
Model.update_comps()
Model.update_links()
Model.update_pars()
Parameter
Parameter.constrain()
Parameter.deps
Parameter.derivative
Parameter.fcn_str
Parameter.id
Parameter.limits
Parameter.links
Parameter.name
Parameter.plot()
Parameter.pop
Parameter.pop_aggregation
Parameter.preallocate()
Parameter.scale_factor
Parameter.set_dynamic()
Parameter.set_fcn()
Parameter.skip_function
Parameter.timescale
Parameter.units
Parameter.update()
Population
Population.build()
Population.charac_lookup
Population.characs
Population.comp_lookup
Population.comps
Population.get_charac()
Population.get_comp()
Population.get_links()
Population.get_par()
Population.get_variable()
Population.initialize_compartments()
Population.label
Population.link_lookup
Population.links
Population.name
Population.par_lookup
Population.pars
Population.popsize()
Population.type
ResidualJunctionCompartment
ResidualJunctionCompartment.balance()
ResidualJunctionCompartment.connect()
ResidualJunctionCompartment.duration_group
ResidualJunctionCompartment.id
ResidualJunctionCompartment.initial_flush()
ResidualJunctionCompartment.name
ResidualJunctionCompartment.outflow
ResidualJunctionCompartment.plot()
ResidualJunctionCompartment.pop
ResidualJunctionCompartment.preallocate()
ResidualJunctionCompartment.resolve_outflows()
ResidualJunctionCompartment.set_dynamic()
ResidualJunctionCompartment.units
ResidualJunctionCompartment.update()
SinkCompartment
SinkCompartment.connect()
SinkCompartment.id
SinkCompartment.name
SinkCompartment.outflow
SinkCompartment.plot()
SinkCompartment.pop
SinkCompartment.preallocate()
SinkCompartment.resolve_outflows()
SinkCompartment.set_dynamic()
SinkCompartment.units
SinkCompartment.update()
SourceCompartment
SourceCompartment.connect()
SourceCompartment.id
SourceCompartment.name
SourceCompartment.outflow
SourceCompartment.plot()
SourceCompartment.pop
SourceCompartment.preallocate()
SourceCompartment.resolve_outflows()
SourceCompartment.set_dynamic()
SourceCompartment.units
SourceCompartment.update()
TimedCompartment
TimedCompartment.connect()
TimedCompartment.flush_link
TimedCompartment.id
TimedCompartment.name
TimedCompartment.outflow
TimedCompartment.parameter
TimedCompartment.plot()
TimedCompartment.pop
TimedCompartment.preallocate()
TimedCompartment.resolve_outflows()
TimedCompartment.set_dynamic()
TimedCompartment.units
TimedCompartment.update()
TimedCompartment.vals
TimedLink
TimedLink.create()
TimedLink.id
TimedLink.name
TimedLink.plot()
TimedLink.pop
TimedLink.preallocate()
TimedLink.set_dynamic()
TimedLink.units
TimedLink.update()
TimedLink.vals
Variable
Variable.id
Variable.name
Variable.plot()
Variable.pop
Variable.preallocate()
Variable.set_dynamic()
Variable.units
Variable.update()
BadInitialization
ModelError
constrain_sum_bounded()
optimize()
Adjustable
Adjustable.get_hard_bounds()
Adjustment
Adjustment.adjustables
Adjustment.get_initialization()
AtLeastMeasurable
AtLeastMeasurable.get_baseline()
AtLeastMeasurable.get_objective_val()
AtMostMeasurable
AtMostMeasurable.get_baseline()
AtMostMeasurable.get_objective_val()
Constraint
Constraint.constrain_instructions()
Constraint.get_hard_constraint()
DecreaseByMeasurable
DecreaseByMeasurable.get_baseline()
DecreaseByMeasurable.get_objective_val()
ExponentialSpendingAdjustment
ExponentialSpendingAdjustment.adjustables
ExponentialSpendingAdjustment.get_initialization()
IncreaseByMeasurable
IncreaseByMeasurable.get_baseline()
IncreaseByMeasurable.get_objective_val()
MaximizeCascadeConversionRate
MaximizeCascadeConversionRate.get_baseline()
MaximizeCascadeConversionRate.get_objective_val()
MaximizeCascadeStage
MaximizeCascadeStage.get_baseline()
MaximizeCascadeStage.get_objective_val()
MaximizeMeasurable
MaximizeMeasurable.get_baseline()
MaximizeMeasurable.get_objective_val()
Measurable
Measurable.get_baseline()
Measurable.get_objective_val()
MinimizeMeasurable
MinimizeMeasurable.get_baseline()
MinimizeMeasurable.get_objective_val()
Optimization.compute_objective()
Optimization.constrain_instructions()
Optimization.get_adjustment()
Optimization.get_baselines()
Optimization.get_hard_constraints()
Optimization.get_initialization()
Optimization.maxiters
Optimization.maxtime
Optimization.method
Optimization.update_instructions()
PairedLinearSpendingAdjustment
PairedLinearSpendingAdjustment.adjustables
PairedLinearSpendingAdjustment.get_initialization()
SpendingAdjustment
SpendingAdjustment.adjustables
SpendingAdjustment.get_initialization()
SpendingPackageAdjustment
SpendingPackageAdjustment.adjust_total_spend
SpendingPackageAdjustment.adjustables
SpendingPackageAdjustment.get_initialization()
StartTimeAdjustment
StartTimeAdjustment.adjustables
StartTimeAdjustment.get_initialization()
TotalSpendConstraint
TotalSpendConstraint.constrain_instructions()
TotalSpendConstraint.get_hard_constraint()
FailedConstraint
InvalidInitialConditions
UnresolvableConstraint
Initialization
Initialization.apply()
Initialization.from_excel()
Initialization.from_result()
Initialization.hash_y_factors()
Parameter.has_values()
Parameter.interpolate()
Parameter.pops
Parameter.sample()
Parameter.smooth()
ParameterSet.all_pars()
ParameterSet.apply_initialization()
ParameterSet.calibration_spreadsheet()
ParameterSet.get_par()
ParameterSet.initialization
ParameterSet.load_calibration()
ParameterSet.make_constant()
ParameterSet.sample()
ParameterSet.save_calibration()
ParameterSet.y_factors
plot_bars()
plot_legend()
plot_series()
relabel_legend()
reorder_legend()
save_figs()
separatelegend()
PlotData.__getitem__()
PlotData.accumulate()
PlotData.interpolate()
PlotData.programs()
PlotData.set_colors()
PlotData.time_aggregate()
PlotData.tvals()
Series
Series.data_label
Series.data_pop
Series.interpolate()
Series.timescale
Series.unit_string
Series.units
Covout
Covout.compute_impact_interaction()
Covout.get_outcome()
Covout.n_progs
Covout.sample()
Covout.update_outcomes()
Program
Program.baseline_spend
Program.capacity_constraint
Program.coverage
Program.get_capacity()
Program.get_prop_covered()
Program.get_spend()
Program.is_one_off
Program.label
Program.name
Program.sample()
Program.saturation
Program.spend_data
Program.target_comps
Program.target_pops
Program.unit_cost
ProgramInstructions
ProgramInstructions.scale_alloc()
ProgramSet
ProgramSet.add_comp()
ProgramSet.add_par()
ProgramSet.add_pop()
ProgramSet.add_program()
ProgramSet.from_spreadsheet()
ProgramSet.get_alloc()
ProgramSet.get_capacities()
ProgramSet.get_outcomes()
ProgramSet.get_prop_coverage()
ProgramSet.new()
ProgramSet.remove_comp()
ProgramSet.remove_par()
ProgramSet.remove_pop()
ProgramSet.remove_program()
ProgramSet.sample()
ProgramSet.to_spreadsheet()
ProgramSet.to_workbook()
ProgramSet.validate()
InvalidProgramBook
Project
Project.calibrate()
Project.create_databook()
Project.load()
Project.load_databook()
Project.load_progbook()
Project.make_parset()
Project.make_progbook()
Project.make_scenario()
Project.optim()
Project.parset()
Project.parsets
Project.progset()
Project.result()
Project.run_optimization()
Project.run_sampled_sims()
Project.run_scenarios()
Project.run_sim()
Project.save()
Project.scen()
Project.update_settings()
ProjectSettings
ProjectSettings.tvec
ProjectSettings.update_time_vector()
reconcile()
export_results()
Ensemble
Ensemble.add()
Ensemble.baseline
Ensemble.boxplot()
Ensemble.mapping_function
Ensemble.n_samples
Ensemble.outputs
Ensemble.plot_bars()
Ensemble.plot_distribution()
Ensemble.plot_series()
Ensemble.pops
Ensemble.results
Ensemble.run_sims()
Ensemble.samples
Ensemble.set_baseline()
Ensemble.tvec
Ensemble.update()
Result
Result.charac_names()
Result.check_for_nans()
Result.comp_names()
Result.dt
Result.export_raw()
Result.framework
Result.get_alloc()
Result.get_coverage()
Result.get_equivalent_alloc()
Result.get_variable()
Result.link_names()
Result.par_names()
Result.plot()
Result.pop_labels
Result.t
Result.used_programs
BudgetScenario
BudgetScenario.active
BudgetScenario.get_instructions()
BudgetScenario.get_parset()
BudgetScenario.get_progset()
BudgetScenario.parsetname
BudgetScenario.progsetname
BudgetScenario.run()
CombinedScenario
CombinedScenario.active
CombinedScenario.get_instructions()
CombinedScenario.get_parset()
CombinedScenario.get_progset()
CombinedScenario.interpolation
CombinedScenario.parsetname
CombinedScenario.progsetname
CombinedScenario.run()
CombinedScenario.scenario_values
CoverageScenario
CoverageScenario.active
CoverageScenario.get_instructions()
CoverageScenario.get_parset()
CoverageScenario.get_progset()
CoverageScenario.parsetname
CoverageScenario.progsetname
CoverageScenario.run()
ParameterScenario.active
ParameterScenario.add()
ParameterScenario.get_instructions()
ParameterScenario.get_parset()
ParameterScenario.get_progset()
ParameterScenario.interpolation
ParameterScenario.parsetname
ParameterScenario.progsetname
ParameterScenario.run()
ParameterScenario.scenario_values
Scenario
Scenario.active
Scenario.get_instructions()
Scenario.get_parset()
Scenario.get_progset()
Scenario.parsetname
Scenario.progsetname
Scenario.run()
atomica_path()
FrameworkSettings
NotFoundError
datetime_to_year()
evaluate_plot_string()
format_duration()
get_sigfigs_necessary()
nested_loop()
parallel_progress()
parent_dir()
start_logging()
stop_logging()
NDict
NDict.__add__()
NDict.append()
NDict.clear()
NDict.copy()
NDict.dict_items()
NDict.dict_keys()
NDict.dict_values()
NDict.disp()
NDict.enumitems()
NDict.enumkeys()
NDict.enumvals()
NDict.enumvalues()
NDict.export()
NDict.filter()
NDict.filtervals()
NDict.findbykey()
NDict.findbyval()
NDict.findkeys()
NDict.fromeach()
NDict.fromkeys()
NDict.get()
NDict.getnested()
NDict.index()
NDict.insert()
NDict.items()
NDict.iteritems()
NDict.iternested()
NDict.keys()
NDict.make()
NDict.makefrom()
NDict.makenested()
NDict.map()
NDict.pop()
NDict.popitem()
NDict.promote()
NDict.remove()
NDict.rename()
NDict.reverse()
NDict.reversed()
NDict.setdefault()
NDict.setitem()
NDict.setnested()
NDict.sort()
NDict.sorted()
NDict.toeach()
NDict.update()
NDict.valind()
NDict.values()
NamedItem
Quiet
TimeSeries.assumption
TimeSeries.copy()
TimeSeries.get()
TimeSeries.get_arrays()
TimeSeries.has_data
TimeSeries.has_time_data
TimeSeries.insert()
TimeSeries.interpolate()
TimeSeries.remove()
TimeSeries.remove_after()
TimeSeries.remove_before()
TimeSeries.remove_between()
TimeSeries.sample()
TimeSeries.sigma
TimeSeries.t
TimeSeries.units
TimeSeries.vals
build()
run()
BaseNode
BaseNode.apply()
BaseNode.validate()
CalibrationNode.apply()
CalibrationNode.validate()
ClearInitializationNode
ClearInitializationNode.apply()
ClearInitializationNode.validate()
InitializationNode
InitializationNode.apply()
InitializationNode.validate()
SaveCalibrationNode
SaveCalibrationNode.apply()
SaveCalibrationNode.validate()
SectionNode
SectionNode.apply()
SectionNode.validate()
Atomica version file.
Standard location for module version number and date.