Source code for atomica.demos

Defines some defaults for Atomica projects

Version: 2018sep24


import sciris as sc
from .project import Project
from .system import LIBRARY_PATH, logger
from .scenarios import BudgetScenario
from .utils import TimeSeries

__all__ = ["demo", "make_demo_scenarios"]

[docs]def demo(which: str = None, do_run: bool = True, addprogs: bool = True) -> Project: """ Return a demo project :param which: A supported demo project type e.g. 'sir', 'tb' :param do_run: If True, run the model and store a set of results :param addprogs: If True, load the progbook and create program scenarios :return: A Project instance """ options = [ "udt", "udt_dyn", "usdt", "cervicalcancer", "sir", "diabetes", "combined", # 'service', "hypertension", "hypertension_dyn", "hiv", "hiv_dyn", "tb_simple", "tb_simple_dyn", "environment", "tb", ] dtdict = sc.odict.fromkeys(options, 1.0) dtdict["tb"] = 0.5 if which is None or which not in options: raise Exception("Supported project types are:\n%s" % ("\n".join(options))) framework = LIBRARY_PATH / f"{which}_framework.xlsx" databook = LIBRARY_PATH / f"{which}_databook.xlsx" progbook = LIBRARY_PATH / f"{which}_progbook.xlsx" logger.debug("Creating a " + which + " project...") P = Project(framework=framework, databook=databook, do_run=False) P.settings.sim_dt = dtdict[which] if do_run: P.run_sim(store_results=True) if addprogs: logger.debug("Loading progbook") P.load_progbook(progbook) logger.debug("Creating program scenarios") make_demo_scenarios(P) logger.debug("Finished creating demo project") return P
[docs]def make_demo_scenarios(proj: Project) -> None: """ Create demo scenarios This method creates three default budget scenarios - Default budget - Doubled budget - Zero budget The scenarios will be created and added to the project's list of scenarios :param proj: A :class:`Project` instance. New scenarios will be added in-place """ parsetname = proj.parsets[-1].name progset = proj.progsets[-1] start_year = # Come up with the current allocation by truncating after the start year current_budget = {} for prog in progset.programs.values(): if prog.spend_data.has_time_data: current_budget[] = sc.dcp(prog.spend_data) else: current_budget[] = TimeSeries(start_year, prog.spend_data.assumption) # Add default budget scenario # proj.scens.append(CombinedScenario(name='Default budget',parsetname=parsetname,,active=True,instructions=ProgramInstructions(start_year,alloc=current_budget))) proj.scens.append(BudgetScenario(name="Default budget", parsetname=parsetname,, active=True, alloc=current_budget, start_year=start_year)) # Add doubled budget doubled_budget = sc.dcp(current_budget) for ts in doubled_budget.values(): ts.insert(start_year, ts.interpolate(start_year)) ts.remove_after(start_year) ts.insert(start_year + 1, ts.get(start_year) * 2) # proj.scens.append(CombinedScenario(name='Doubled budget',parsetname=parsetname,,active=True,instructions=ProgramInstructions(start_year,alloc=doubled_budget))) proj.scens.append(BudgetScenario(name="Doubled budget", parsetname=parsetname,, active=True, alloc=doubled_budget, start_year=start_year)) # Add zero budget zero_budget = sc.dcp(doubled_budget) for ts in zero_budget.values(): ts.insert(start_year + 1, 0.0) # proj.scens.append(CombinedScenario(name='Zero budget',parsetname=parsetname,,active=True,instructions=ProgramInstructions(start_year,alloc=zero_budget))) proj.scens.append(BudgetScenario(name="Zero budget", parsetname=parsetname,, active=True, alloc=zero_budget, start_year=start_year))